Cold and hot fibrosis define clinically distinct cardiac pathologies

Shoval Miyara*, Miri Adler*, Kfir Baruch Umansky,  Daniel Häußler, Elad Bassat, Yalin Divinsky, Jacob Elkahal, David Kain, Daria Lendengolts, Ricardo O. Ramirez Flores, Hanna Bueno Levy, Ofra Golani, Tali Shalit, Michael Gershovits, Eviatar Weizman, Alexander Genzelinakh, Danielle M. Kimchi, Avraham Shakked, Lingling Zhang, Jingkui Wang, Andrea Baehr, Zachary Petrover, Rachel Sarig, Tatjana Dorn, Alessandra Moretti, Julio Saez-Rodriguez, Christian Kupatt, Elly M. Tanaka, Ruslan Medzhitov, Achim Krüger, Avi Mayo, Uri Alon, Eldad Tzahor, Cell Systems (2025)​​

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Tissue-level division of labor is coordinated across organs through universal programs and context-specific adaptations

Shira Yonassi, Noa Goldenberg, Avia Walfisch, Eitan Cohen, Einat Shaer Tamar, and Miri Adler, bioRxiv (2025)

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ParTIpy: A Scalable Framework for Archetypal Analysis and Pareto Task Inference

Philipp SL Schäfer, Leoni Zimmermann, Paul L Burmedi, Avia Walfisch, Noa Goldenberg, Shira Yonassi, Einat Shaer Tamar, Miri Adler, Jovan Tanevski, Ricardo O Ramirez Flores, Julio Saez-Rodriguez, bioRxiv (2025)

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A fibroblast-centric network drives cold fibrosis in the tumor microenvironment of lung squamous cell carcinoma

Shoval Miyara, Shachaf Frenkel, Avi Mayo, Philippe Gascard, Michael Strasser, David Gibbs, Eviatar Weizman, Itay Ben Shalom, Yaniv Stein, Deng Pan, Joseph A Caruso, Veena Sangwan, Nicholas Bertos, Julie Berube, Sophie Camilleri-Broet, Spyridon Oikonomopoulos, Haig Djambazian, Kfir Baruch Umansky, Jacob Elkahal, Shimrit Mayer, Pierre-Olivier Fiset, Jiannis Ragoussis, Miri Adler, Eldad Tzahor, Sui Huang, Lorenzo Ferri, Thea D Tlsty, Ruth Scherz-Shouval, Uri Alon, bioRxiv (2025)

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Temporal control of axonal floor plate crossing through a combination of incoherent feedforward and feedback loops of gene regulatory network regulating Robo3 expression

Reut Sudakevitz-Merzbach, Madhuri Majumder, Gerard Elberg, Marah Bakhtan, Dina Rekler, Sophie Khazanov, Benjamin J Wheaton, Nissim Ben-Arie, Gilgi Friedlander, Chaya Kalchiem, Sara Ivy Wilson, Alexander Jaworski, Miri Adler, and Avihu Klar, bioRxiv (2025)